Preheat your oven to 350F. Prepare a 12-count muffin pan by lining it with cupcake liners.
In a medium bowl, whisk together the whole wheat pastry flour, baking powder, salt, cinnamon, and nutmeg.
Add the zucchini, applesauce, maple syrup, vanilla, aquafaba, and nondairy milk to a high powered blender. Blend until the mixture is very smooth.
Pour your blended mixture into the bowl with the dry mixture. Whisk or stir until just combined.
Add your chocolate chips to the mixture and stir until evenly incorporated.
Pour your batter into your prepared muffin pan, filling each liner about ⅔ full.
Place in your preheated oven and bake for 20-25 minutes, or until a toothpick inserted into the center comes out clean (25 minutes is usually perfect for me, but every oven is a little different!)
Allow the muffins to cool in the muffin pan for a few minutes, and then transfer to a wire rack to continue cooling. Serve whenever they reach your desired temperature (I love them when they're still a bit warm). Enjoy!